We assembly the duck 1.0 genome to chromosome level based on Rao's(BMC Genomics, 2012, 13(1): 513) RH map.

Here are the genome sequence and annotation.

duckbase.refseq.v4.fasta : 29 autosomes, ZW sex chromosome and a unplaced pseudochromosome.

duckbase.refseq.v4.NCBI.gtf : NCBI annotation coordinate transformation.

BGI_1.0 Duck Genome:download

BGI_1.0 Genome annotation:download


The new duck genome sequence assembly by single-molecule sequencing, chromatin conformation capture and optical mapping approach. The genome annotation performed by NCBI Eukaryotic Genome Annotation Pipeline.

Here are the genome sequence and annotation.

IASCAAS_PekingDuck_PBH1.5.fasta : 29 autosomes, Z sex chromosome and a unplaced pseudochromosome(U chromosome).

IASCAAS_PekingDuck_PBH1.5.gff : Partial NCBI annotation coordinate conversion of U chromosome.

PBH1.5 Genome:download

PBH1.5 Genome annotation:download


The supplementary datasets of paper "Genome analyses of a wild * domestic cross reveals genes associated with body size and plumage color of ducks".

Dataset 1: The population genetics varation (vcf format): SNP indel

Dataset 2: Duck ancestral state: download

Dataset 3: Duck global transcriptome dataset: download

Dataset 4: The significant loci in the genome-wide association study of the F2 population: download

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Institute of Animal Science, Chinese Academy of Agricultural Sciences.